Source code for pyrfu.mms.list_files_aws

#!/usr/bin/env python
# -*- coding: utf-8 -*-

# Built-in imports
import datetime
import json
import os
import re
from typing import Any, Mapping, Optional, Union

# 3rd party imports
import boto3
import numpy as np
from dateutil import parser
from dateutil.rrule import DAILY, rrule

from pyrfu.mms.db_init import MMS_CFG_PATH

# Local imports
from pyrfu.pyrf.datetime642iso8601 import datetime642iso8601
from pyrfu.pyrf.iso86012datetime64 import iso86012datetime64

__author__ = "Louis Richard"
__email__ = "louisr@irfu.se"
__copyright__ = "Copyright 2020-2023"
__license__ = "MIT"
__version__ = "2.4.13"
__status__ = "Prototype"


[docs]def list_files_aws( tint: list[str], mms_id: Union[str, int], var: Mapping[str, str], bucket_prefix: Optional[str] = "", ) -> list[dict[str, Any]]: r"""List files from Amazon Web Services (AWS). Find available files from the Amazon Wed Services (AWS) for the target instrument, data type, data rate, mms_id and level during the target time interval. Parameters ---------- tint : list of str Time interval mms_id : str or int Index of the spacecraft var : dict Dictionary containing 4 keys * var["inst"] : name of the instrument * var["tmmode"] : data rate * var["lev"] : data level * var["dtype"] : data type bucket_prefix : str, Optional Name of AWS S3 bucket. Returns ------- file_names : list of str List of files corresponding to the parameters in the selected time interval Raises ------ FileNotFoundError If the path doesn't exist in the AWS S3 bucket or if the bucket doesn't exist. TypeError If the time interval is not array_like or if tint values are not in datetime64 or str. """ # Start S3 session s3 = boto3.resource("s3") # Check path if not bucket_prefix: # Read the current version of the MMS configuration file with open(MMS_CFG_PATH, "r", encoding="utf-8") as fs: config = json.load(fs) aws_path_split = config["aws"].split("/") else: aws_path_split = bucket_prefix.split("/") bucket_name, prefix = aws_path_split[0], "/".join(aws_path_split[1:]) # Make sure that the data path exists bucket = s3.Bucket(bucket_name) if not bucket: raise FileNotFoundError(f"{bucket_name} doesn't exist!!") if bucket.objects.filter(Prefix=prefix): raise FileNotFoundError(f"{prefix} doesn't exist in {bucket_name}") # Check time interval if isinstance(tint, list): tint_array = np.array(tint) else: raise TypeError("tint must be a list!!") # Convert time interval to ISO 8601 if isinstance(tint_array[0], str): tint_iso8601 = datetime642iso8601(iso86012datetime64(tint_array)) else: raise TypeError("Values must be in str!!") if not isinstance(mms_id, str): mms_id = str(mms_id) # directory and file name search patterns: # - assume directories are of the form: # (srvy, SITL): spacecraft/instrument/rate/level[/datatype]/year/month/ # (brst): spacecraft/instrument/rate/level[/datatype]/year/month/day/ # - assume file names are of the form: # spacecraft_instrument_rate_level[_datatype]_YYYYMMDD[hhmmss]_version.cdf file_name = ( f"mms{mms_id}_{var['inst']}_{var['tmmode']}_{var['lev']}" + r"(_)?.*_([0-9]{8,14})_v(\d+).(\d+).(\d+).cdf" ) d_start = parser.parse(parser.parse(tint_iso8601[0]).strftime("%Y-%m-%d")) until_ = parser.parse(tint_iso8601[1]) - datetime.timedelta(seconds=1) days = rrule(DAILY, dtstart=d_start, until=until_) if var["dtype"] == "" or var["dtype"] is None: level_and_dtype = var["lev"] else: level_and_dtype = os.sep.join([var["lev"], var["dtype"]]) files_out = [] for date in days: if var["tmmode"] == "brst": bucket_prefix = os.sep.join( [ prefix, f"mms{mms_id}", var["inst"], var["tmmode"], level_and_dtype, date.strftime("%Y"), date.strftime("%m"), date.strftime("%d"), ], ) else: bucket_prefix = os.sep.join( [ prefix, f"mms{mms_id}", var["inst"], var["tmmode"], level_and_dtype, date.strftime("%Y"), date.strftime("%m"), ], ) full_path = os.sep.join([re.escape(bucket_prefix), file_name]) regex = re.compile(full_path) files = bucket.objects.filter(Prefix=bucket_prefix) for file in files: this_file = file.key matches = regex.match(this_file) if matches: this_time = parser.parse(matches.groups()[1]) if d_start <= this_time <= until_: if this_file not in files_out: files_out.append( { "s3_obj": file, "timetag": "", "full_name": this_file, "file_size": "", }, ) return files_out